Results for Standard Proteins
with WM ranging from 6.5 kDa to 476 kDa. 


Molecular Weights Determined from ASTRA analysis.
 
Protein Oligomeric state Predicted  
MW (kDa)a
# runs Average MW (kDa) Standard deviation 
(kDa)b
Average (%) errorc
Alc. dehydrogenase tetramer 147.4  144.0  0.9  2.4 
BSA (monomer) monomer 66.4  67.1  1.0  1.2 
BSA (dimer dimer 132.9  137.1  3.9  3.2 
Carbonic anhydrase monomer 29.0  29.2  0.2  0.8 
Cytochrome C monomer 12.3  12.0  0.6  2.4 
Apo-ferritin 24 x monomer 475.9  470.4  2.6  1.2 
a-lactalbumin monomer 14.2  14.3  0.01  0.9 
Aldolase (rabbit) tetramer 156.8  155.1    1.1 
b-lactglobulin monomer 18.3  20.1  0.3  9.7 
Enolase (rabbit)d dimer 93.7  86.4d  1.9  7.8 d
Enolase (yeast)d dimer 93.3  79.5 d   14.9d 
Myoglobine monomer 17.0  14.2  0.9  16.3e 
Transferrin monomer 75.2  76.9  1.0  2.3 
Tripsin inhibitor monomer 20.0  20.5    2.3 
Ovalbumin monomer 42.8  10  42.5  0.7  1.4 
Aprotininf monomer 6.5  6.8  0.5  4.6 
Median: 0.9  2.3 
(column: Superdex 200 [Pharmacia], buffer: 20 mM HEPES, 100 mM KCl, 1 mM EDTA pH=8.0).

a pred. MW was calculated based on protein sequence as retrieved from the ExPASy molecular biology WWW server of the Swiss Institute of Bioinformatics (SIB) http://expasy.hcuge.ch/  (except of Aprotinin)
b    SD represents one standard deviation calculated as  S.D. =  SQRT{ [sum(Yi-M)^2]/(n-1)}  ,   where
    M     is arithmetic mean caluclated as M = sum(Yi )/n   (given in column "Average Experimental MW")
    Yi     is a result of the "ith" measurement , i.e. MW determined in the "ith" run    
    n      is a number of runs
c    % error is calculated as an average from the absolute values of {100x[(Experimental MW-pred. MW)/pred. MW]}
d   these dimers are unstable under chromatographic condition used, i.e. buffer with 1 mM EDTA.
e   colored protein: absorbs at the wavelength of the laser beam (633 nm).  Thus the amount of scattered light is smaller and leads to underestimated Mw as the instrument is not capable of correcting for the absorbed light.
  analyzed on Superdex 75 column in 20 mM HEPES, 600 mM KCl, 1 mM EDTA , 1 mM DTT, pH=8.0
 



Comparison of  MW determined by "two detector" approximation and ASTRA analysis


 

Molecular Weight Determined from  "two detector" analysis
 
Protein
Oligomeric state
predicted MW
(kDa)
number of runs
Average
Experimental MW
(kDa)
SDa)
(kDa)
Average
differenceb)
(%)
comments
Alcohol  
Dehydrogenase
tetramer
 147.5 
 4 
 145.8 
 1.5
 1.2
 
BSA (monomer)
monomer
 66.4 
 5 
 67.1 
 0.9
 1.2
 
BSA (dimer)
dimer
 132.9 
 5 
 140.6 
 2.8
 5.8
 
Carbonic    
Anhydrase
monomer
 29.0 
 4 
 29.8 
 1.0
 3.8
 
Cytochrome C
monomer
 12.3 
 5 
 11.9 
 0.2
  2.9*
colored* 
Apo-ferritin
24*monomer
 475.9 
 2 
 469.8 
0.3
 1.3
 
Alfa-Lactalbumin
monomer
 14.2 
 2 
 15.1 
 0.03
 6.8
 
Aldolase (rabbit)
tetramer
 156.8 
 1 
 150.6 
 
2.2
 
Beta-lactglobulin
monomer
+dimer
 18.3 
 2 
 21.5 
 0.5
 17.5
 known to dimerize at low pH
Enolase (rabbit)
dimer
+monomer
 93.7 
 4 
 86.9 
 1.5
 7.2**
needs Mg2+ for dimer stability 
Enolase (yeast)
dimer
+monomer
 93.3 
 1 
 80.1 
 
 14.2**
 needs Mg2+ for dimer stability 
Glutamate   
Dehydrogenase
hexamer
333.4 
 6 
 461.6 
 44.2
 38.5
 "tailing" polydisperse peak
Myoglobin
monomer
 17.0 
 3 
 14.2 
 1.6
 16.2*
colored* 
Transferrin
monomer
 75.2 
 2 
 78.0 
 0.3
3.8
 
Trypsin Inhibitor
monomer
 20.0 
 1 
 21.0 
 
 5.0
 
Ovalbumin
monomer
 42.8 
 10 
 43.6 
  0.5
 1.9
 
Buffer used 20 mM HEPES, 100 mM KCl, 1 mM EDTA pH=8.0 @ RT
 
a)   SD represents one standard deviation calculated as S.D. =  SQRT{ [sum(Yi-M)^2]/(n-1)}, where
M     is arithmetic mean caluclated as M = sum(Yi )/n   (given in column "Average Experimental MW")
Yi     is a result of the "ith" measurement , i.e. MW determined in the "ith" run    
n      is a number of runs
b)    Average difference (%) is calculated as absolute value of {100*[(Average Experimental MW-predicted MW)/predicted MW]}
 
* colored proteins absorb at the wavelength of the laser beam (633 nm).  Thus the amount of scattered light is smaller and leads to underestimated Mw as the instrument is not capable of correcting for the absorbed light.
** these dimers are unstable under chromatographic condition used, i.e. buffer with 1 mM EDTA.
 

Molecular Weight Determined from ASTRA analysis
 
Protein
Oligomeric state
Predicted MW
(kDa)
Number of runs
Average
Experimental MW
(kDa)
SD
(kDa)
Average
difference
(%)
Comments
Alcohol  
Dehydrogenase
tetramer
 147.5 
 4 
 144.0 
 0.9
 2.4
 
BSA (monomer)
monomer
 66.4 
 5 
 67.1 
 1.0
 1.2
 
BSA (dimer)
dimer
 132.9 
 5 
 137.1 
 3.9
 3.2
 
Carbonic    
Anhydrase
monomer
 29.0 
 4 
 29.2 
 0.2
 0.8
 
Cytochrome C
monomer
 12.3 
 5 
 12.0 
 0.6
 2.4*
colored* 
Apo-ferritin
24*monomer
 475.9 
 2 
 470.4 
2.6
 1.2
 
Alfa-Lactalbumin
monomer
 14.2 
 2 
 14.3 
 0.01
 0.9
 
Aldolase (rabbit)
tetramer
 156.8 
 1 
 155.1 
 
1.1
 
Beta-lactglobulin
monomer
+dimer
 18.3 
 2 
 20.1 
 0.3
 9.7
 known to dimerize at low pH
Enolase (rabbit)
dimer
+monomer
 93.7 
 4 
 86.4 
 1.9
 7.8**
needs Mg2+ for dimer stability 
Enolase (yeast)
dimer
+monomer
 93.3 
 1 
 79.5 
 
 14.9**
 needs Mg2+ for dimer stability 
Glutamate   
Dehydrogenase
hexamer
333.4 
 6 
 486.5 
 48.7
 45.9
 "tailing" polydisperse peak
Myoglobin
monomer
 17.0 
 3 
 14.2 
 0.9
 16.3*
colored* 
Transferrin
monomer
 75.2 
 2 
 76.9 
 1.0
2.3
 
Trypsin Inhibitor
monomer
 20.0 
 1 
 20.5 
 
 2.3
 
Ovalbumin
monomer
 42.8 
 10 
 42.5 
  0.7
 1.4
 
Buffer used:  20 mM HEPES, 100 mM KCl, 1 mM EDTA pH=8.0 @ RT

a)    SD represents one standard deviation calculated as  S.D. =  SQRT{ [sum(Yi-M)^2]/(n-1)}  ,   where
M     is arithmetic mean caluclated as M = sum(Yi )/n   (given in column "Average Experimental MW")
Yi     is a result of the "ith" measurement , i.e. MW determined in the "ith" run    
n      is a number of runs

b)    Average difference (%) is calculated as absolute value of {100*[(Average Experimental MW-predicted MW)/predicted MW]}

* colored proteins absorb at the wavelength of the laser beam (633 nm) and the instrument  is not capable of correcting for the absorbed light.  Thus the amount of scattered light is smaller and leads to underestimated Mw.
** these dimers are unstable under chromatographic condition used, i.e. buffer with 1 mM EDTA.


 Introduction to Light  Scattering
 Light Scattering  Theory 
 Light Scattering  Data Set  
Results for Standard Proteins
Light Scattering  Service
Light Scattering
Front Page