| Protein | Oligomeric state | Predicted
MW (kDa)a |
# runs | Average MW (kDa) | Standard deviation
(kDa)b |
Average (%) errorc |
| Alc. dehydrogenase | tetramer | 147.4 | 4 | 144.0 | 0.9 | 2.4 |
| BSA (monomer) | monomer | 66.4 | 5 | 67.1 | 1.0 | 1.2 |
| BSA (dimer | dimer | 132.9 | 5 | 137.1 | 3.9 | 3.2 |
| Carbonic anhydrase | monomer | 29.0 | 4 | 29.2 | 0.2 | 0.8 |
| Cytochrome C | monomer | 12.3 | 5 | 12.0 | 0.6 | 2.4 |
| Apo-ferritin | 24 x monomer | 475.9 | 2 | 470.4 | 2.6 | 1.2 |
| a-lactalbumin | monomer | 14.2 | 2 | 14.3 | 0.01 | 0.9 |
| Aldolase (rabbit) | tetramer | 156.8 | 1 | 155.1 | 1.1 | |
| b-lactglobulin | monomer | 18.3 | 2 | 20.1 | 0.3 | 9.7 |
| Enolase (rabbit)d | dimer | 93.7 | 4 | 86.4d | 1.9 | 7.8 d |
| Enolase (yeast)d | dimer | 93.3 | 1 | 79.5 d | 14.9d | |
| Myoglobine | monomer | 17.0 | 3 | 14.2 | 0.9 | 16.3e |
| Transferrin | monomer | 75.2 | 2 | 76.9 | 1.0 | 2.3 |
| Tripsin inhibitor | monomer | 20.0 | 1 | 20.5 | 2.3 | |
| Ovalbumin | monomer | 42.8 | 10 | 42.5 | 0.7 | 1.4 |
| Aprotininf | monomer | 6.5 | 2 | 6.8 | 0.5 | 4.6 |
| Median: | 0.9 | 2.3 | ||||
a pred. MW was calculated based on
protein sequence as retrieved from the ExPASy molecular biology WWW server
of the Swiss Institute of Bioinformatics (SIB) http://expasy.hcuge.ch/
(except of Aprotinin)
b
SD represents one standard deviation calculated as S.D. = SQRT{
[sum(Yi-M)^2]/(n-1)} , where
M is arithmetic mean caluclated as M = sum(Yi )/n
(given in column "Average Experimental MW")
Yi is a result of the "ith" measurement , i.e.
MW determined in the "ith" run
n is a number of runs
c %
error is calculated as an average from the absolute values of {100x[(Experimental
MW-pred. MW)/pred. MW]}
d
these
dimers are unstable under chromatographic condition used, i.e. buffer with
1 mM EDTA.
e colored
protein: absorbs at the wavelength of the laser beam (633 nm).
Thus the amount of scattered light is smaller and leads to underestimated
Mw as the instrument is not capable of correcting for the absorbed light.
f
analyzed on Superdex 75 column in 20 mM HEPES, 600 mM KCl, 1 mM
EDTA , 1 mM DTT, pH=8.0
Molecular
Weight Determined from "two
detector" analysis
|
|
|
|
|
|
|
|
|
| Alcohol
Dehydrogenase |
|
147.5
|
|
145.8
|
|
|
|
| BSA (monomer) |
|
66.4
|
|
67.1
|
|
|
|
| BSA (dimer) |
|
132.9
|
|
140.6
|
|
|
|
| Carbonic
Anhydrase |
|
29.0
|
|
29.8
|
|
|
|
| Cytochrome C |
|
12.3
|
|
11.9
|
|
|
|
| Apo-ferritin |
|
475.9
|
|
469.8
|
|
|
|
| Alfa-Lactalbumin |
|
14.2
|
|
15.1
|
|
|
|
| Aldolase (rabbit) |
|
156.8
|
|
150.6
|
|
|
|
| Beta-lactglobulin |
|
18.3
|
|
21.5
|
|
|
|
| Enolase (rabbit) |
|
93.7
|
|
86.9
|
|
|
|
| Enolase (yeast) |
|
93.3
|
|
80.1
|
|
|
|
| Glutamate
Dehydrogenase |
|
333.4
|
|
461.6
|
|
|
|
| Myoglobin |
|
17.0
|
|
14.2
|
|
|
|
| Transferrin |
|
75.2
|
|
78.0
|
|
|
|
| Trypsin Inhibitor |
|
20.0
|
|
21.0
|
|
|
|
| Ovalbumin |
|
42.8
|
|
43.6
|
|
|
|
Molecular
Weight Determined from ASTRA
analysis
|
|
|
|
|
|
|
|
|
| Alcohol
Dehydrogenase |
|
147.5
|
|
144.0
|
|
|
|
| BSA (monomer) |
|
66.4
|
|
67.1
|
|
|
|
| BSA (dimer) |
|
132.9
|
|
137.1
|
|
|
|
| Carbonic
Anhydrase |
|
29.0
|
|
29.2
|
|
|
|
| Cytochrome C |
|
12.3
|
|
12.0
|
|
|
|
| Apo-ferritin |
|
475.9
|
|
470.4
|
|
|
|
| Alfa-Lactalbumin |
|
14.2
|
|
14.3
|
|
|
|
| Aldolase (rabbit) |
|
156.8
|
|
155.1
|
|
|
|
| Beta-lactglobulin |
|
18.3
|
|
20.1
|
|
|
|
| Enolase (rabbit) |
|
93.7
|
|
86.4
|
|
|
|
| Enolase (yeast) |
|
93.3
|
|
79.5
|
|
|
|
| Glutamate
Dehydrogenase |
|
333.4
|
|
486.5
|
|
|
|
| Myoglobin |
|
17.0
|
|
14.2
|
|
|
|
| Transferrin |
|
75.2
|
|
76.9
|
|
|
|
| Trypsin Inhibitor |
|
20.0
|
|
20.5
|
|
|
|
| Ovalbumin |
|
42.8
|
|
42.5
|
|
|
|
a)
SD
represents one standard deviation calculated as S.D. = SQRT{
[sum(Yi-M)^2]/(n-1)} , where
M
is arithmetic mean caluclated as M = sum(Yi )/n (given in column
"Average Experimental MW")
Yi
is a result of the "ith" measurement , i.e. MW determined in the
"ith" run
n
is a number of runs
b) Average difference (%) is calculated as absolute value of {100*[(Average Experimental MW-predicted MW)/predicted MW]}
* colored
proteins absorb at the wavelength of
the laser beam (633 nm) and the instrument is not capable of correcting
for the absorbed light. Thus the amount of scattered light is smaller
and leads to underestimated Mw.
** these
dimers are unstable under chromatographic condition used, i.e. buffer with
1 mM EDTA.
|
|
|
|
|
|
|
|
|
|
|
|
|
|