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DNA Microarray Resource > KARMA
KARMA
Keck
ARray
Manager and
Annotator
Intra and inter-platform universal array comparison interface
KARMA allows comparison of array content both within and across
species for mouse and human glass slide arrays and Affymetrix chips
offered through the Keck Resource.
Data may also be retrieved based on specific search criteria. Array
comparison is based on UniGene Cluster ID of any specific GenBank
Accession number. UniGene ID and related annotation information is
compiled from several publicly accessible
databases, including UniGene, dbEST, Swiss-Prot, GeneMap99, RHdb,
GeneCards and LocusLink.
The KARMA tool also allows query and
comparisons between user entered gene lists for both commercial and
custom arrays that are not provided by the Resource.
Help text is available at
http://twiki.med.yale.edu/twiki/bin/view/YMDhelp/Karma
This tool is evolving in response to user needs.
Please address questions and provide feedback to:
kei.cheung@yale.edu;
janet hager@yale.edu;
shrikant.mane@yale.edu
Publication: Cheung, K.H.,
Hager, J., Pan, D., Srivastava, R., Mane, S., Li, Y., Miller, P., Williams, K.
(2004) KARMA: A web server application
for comparing and annotating heterogeneous microarray platforms. Nucleic Acids
Research 32(Web Server issue):W441-W444.
http://biryani.med.yale.edu/karma/cgi-bin/mysql/karma.pl
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