The Human 16K oligo array is
printed with Telechem Stealth SMP3 pins in 32 pin conformation. The OHU16K
array has 24 columns and 22 rows with only 4 spots on the 23 rd row in each
of 4 x 8 subarrays. To aid analysis the "grid" pattern for this array for
Axon GenePix Pro analysis, GPS file is downloadable below:
OHU21K
ARRAYS-RETIRED
The
OHU21K array is created from
Version 2.1, 21K Operon 70 mer oligonucleotides. Check
here
for details on the set and
here for a list of gene descriptions.
The gene list for the Keck controls on this array
is in
Keck Array Control Files.
The Human 21K oligo array is
printed with Telechem Stealth SMP3 pins in 48 pin conformation. The OHU21K
array has 24 columns and 20 rows in each of 4 x 12 subarrays. To aid
analysis the "grid" pattern for this array for Axon GenePix Pro analysis,
GPS file is downloadable below:
MOUSE ARRAYS
MEPC3.4K
ARRAYS -
RETIRED
The
Mouse Endocrine
Pancreas
Consortium 3.4K
cDNA array is
printed with Telechem Stealth SMP3 pins in 16 pin conformation. The array
has 24 columns and 18 rows in each of 4 x 4 subarrays.
There are two identical arrays on each slide separated by sufficient space
to allow hybridization of each array under a separate coverslip.
The gene list of the controls on this array
is in
Keck Array Control Files.
The
following is GPS file to aid analysis
the "grid" pattern for this array.
MM4.6K
ARRAYS -
RETIRED
We have processed the Research Genetics 5K
sequence-verifed clone set to arrayable PCR products. This link
allows researchers to search the Research Genetics -
Mouse
5K clone list. as an Excel spreadsheet.
The
Mouse 4.6K
slide represents the first 48
@ 96-well plates, 4,608 cDNAs, from the Research Genetics 5K list.
They are arrayed in a 4 X 4 array with 24 X 24 spots in each
subarray. Each cDNA is represented by duplicate adjacent spots. The
center-to-center spot distance is 175 µm and the spots are 125 µm
diameter. There are two identical arrays on each slide separated by
sufficient space to hybridize each array under a separate coverslip.
The controls for both the MM4.6K and
MM4.6K-R are present as two lines of spots separated from the array
above sub-array one. At the first two positions, there are cy3 and cy5-
end labeled M13 oligonucleotide spots as
"landing-lights".
The gene list of the controls is in
Keck Array Control Files.
The following is GPS file to
aid analysis the "grid" pattern for this array.
IMPORTANT - PLEASE NOTE: We recommend that researchers
re-sequence any clone/EST which yields interesting expression patterns.
There is an intrinsic level of mismatch between clone assignment and actual
identity in the Research Genetics human clone set which our preliminary data
on PCR products suggest may be between 35-40%. Please contact
Janet Hager
if you have sequencing data generated by others at Yale, or beyond, that you
are able to reciprocally share with us regarding the Research Genetics
RG_Hs_seq_ver_060101
set.
NIA15K
ARRAYS
We have
processed an
NIA 15K
mouse cDNA clone set which was made available to us from NCI. More information
on the cDNA set can be found
here.
The
Mouse NIA 15K cDNA array is
printed with Telechem Stealth SMP3 pins in 32 pin conformation. The NIA15K
array has 24 columns and 21 rows in each of 4 x 8 subarrays. The controls of
NIA15K array are within the subarrays. To aid analysis
the "grid" pattern for this array for Axon GenePix Pro analysis, GPS file is
downloadable below:
OMM13K
ARRAYS-
RETIRED
The
OMM13K array is created from a set
of 13K Operon 70 mer oligonucleotides. Check
here
for details on the set and
here
for a list of gene descriptions.
Protocols for labeling and
hybridizing these arrays are available with the slides.
The gene list of the controls on this array
is in
Keck Array Control Files.
The Mouse 13K oligo array is
printed with Telechem Stealth SMP3 pins in 32 pin conformation. The array
has 24 columns and 18 rows in each of 4 x 8 subarrays. To aid analysis the
"grid" pattern for this array for Axon GenePix Pro analysis, GPS file is
downloadable below:
OMM16K
ARRAYS -
RETIRED
The
OMM16K
array is created from a set
of 16K Operon 70 mer oligonucleotides. Check
here
for details on the set and
here
for a list of gene descriptions.
The gene list of the controls on this array
is in
Keck Array Control Files.
The Mouse 16K oligo array is
printed with Telechem Stealth SMP3 pins in 32 pin conformation. The array
has 24 columns and 22 rows with some spots on the 23 rd row in each of 4 x 8 subarrays.
To aid analysis the "grid" pattern for this array for Axon GenePix Pro
analysis, GPS file is downloadable below:
ARABIDOPSIS ARRAYS
AR9.2K
ARRAYS -
RETIRED
The
AR9.2K
array is a cDNA array generated from MSU clone set.
The gene list of the controls on this array
is in
Keck Array Control Files.
The
Arabidopsis 9.2K
arrays contain 9,216 clones,
single spot, 175 µm center-to-center distance, 2 arrays per slide.
AR12K
ARRAYS
The
AR12K
array is a cDNA array generated from MSU clone set. The gene list of the controls on this array
is in
Keck Array Control Files.
The
Arabidopsis 12K
cDNA array is
printed with Telechem Stealth SMP3 pins in 32 pin conformation. The array
has 24 columns and 16 rows in each of 4 x 8 subarrays. To aid analysis the
"grid" pattern for this array for Axon GenePix Pro analysis, GPS file is
downloadable below:
OAR27K
ARRAYS -
First test array FREE
The
OAR27K array is created from a set
of 27K Operon 70 mer oligonucleotides. Check
here
for details on the set and
here
for a list of gene descriptions.
The gene list of the controls on this array
is in
Keck Array Control Files.
The
Arabidopsis 27K oligo array is
printed with Telechem Stealth SMP3 pins in 48 pin conformation. The array has 24 columns and 24 rows
in each of 4 x 12 subarrays.
To aid analysis the "grid" pattern for this array for Axon GenePix Pro
analysis, GPS file is downloadable below:
RAT
ARRAYS
ORR4.8K ARRAYS -RETIRED
The
ORR4.8K
array is created from a set of 4.8K Compugen 65 mer oligonucleotides.
Check
here
for details on the set and
here
for a list of gene descriptions.
The gene list of the controls on this array
is in
Keck Array Control Files.
The
Rat 4.8K oligo array is
printed with Telechem Stealth SMP3 pins in 16 pin conformation. The array has 25 columns and 25 rows
in each of 4 x 4 subarrays.
There are two identical arrays on each slide separated by sufficient space
to allow hybridization of each array under a separate coverslip.
To aid analysis the "grid" pattern for this array for Axon GenePix Pro
analysis, GPS file is downloadable below:
