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Keck Home Page >
DNA Microarray Resource > Primary Analysis
PRIMARY ANALYSIS
Using GenePix
Pro 5.0 or 6.0 and appropriate .gal
files we can grid and analyze standard fluorescent
amino-allyl and Genisphere
dendrimer cy3/cy5 .tiff images
and provide spreadsheet data .gpr
files.
Using
ArrayVision
software we can analyze Genicon RLS
.tiff images and provide spreadsheet data.
Primary analysis can be done as part of a
full service project or to complete a project done in individual
investigators' lab.
Training sessions are provided for both GenePix
Pro 3.0 or 5.0 and
ArrayVision on a
cost-recovery basis. Please contact
Irina Tikhonova for
details.
Basic Axon
GenePix Pro Tutorial - (.ppt courtesy of Dr. V. Reinke)
EXTENDED ANALYSIS
Analysis beyond the generation of
spreadsheet data is provided by the
Keck Biostatistics
Resource employing state-of-the-art commercial softwares such as
GeneSpring and a full range of academic softwares, algorithms and
approaches in the hands of trained biostatisticians on both a cost
recovery and collaborative basis. Please contact
Amy Lin for more details.
Useful Statistical
sites:
Keck Biostatistics
Resource
Terry Speed's Group in UC berkely
Gary Churchill's
Statistical Genetics Group in the Jackson Laboratory
Tibshirani's Lab in Stanford University
Gene Expression
Data Analysis Group in University of Wisconsin - Madison
UCLA Bioinformatics
Eisen's Lab
at LBL
Wing Wong's Lab at
Harvard University
Richard Simon's
Group at NCI
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