Yale School of Medicine

W.M. KECK

Microarray: KEC

Microarray: KECK

Molecular Biotechnology Services
PO Box 201
300 George Street
New Haven, CT 06511
Tel: 203.785.7869
Fax: 203.785.7919
microarrays@yale.edu

Publications

  1. Johnson MB, Kawasawa YI, Mason CE, Krsnik Z, Coppola G, Bogdanovic D, Geschwind DH, Mane SM, State MW, Sestan N. Functional and evolutionary insights into human brain development through global transcriptome analysis. Neuron. 2009 May 28;62(4):494-509.
  2. Chaturvedi RK, Adhihetty P, Shukla S, Hennessy T, Calingasan N, Yang L, Starkov A, Kiaei M, Cannella M, Sassone J, Ciammola A, Squitieri F and Beal MF. (2009) Impaired PGC-1alpha function in muscle in Huntington’s disease. Human Molecular Genetics; May 19;18.
  3. Hoffman AE, Zheng T, Stevens RG, Ba Y, Zhang Y, Leaderer D, Yi C, Holford TR, and Zhu Y. (2009) Clock-cancer connection in non-Hodgkin's Lymphoma: a genetic association study and pathway analysis of the circadian gene Cryptochrome 2. Cancer Res; April 15; 69(8).
  4. Scholl UI, Choi M, Liu T, Ramaekers VT, Hauslerc MG, Grimmerd J,
    Tobee SW, Farhia A, Nelson-Williams C, and Lifton RP.  (2009) Seizures, sensorineural deafness, ataxia, mental retardation, and electrolyte imbalance (SeSAME
    syndrome) caused by mutations in KCNJ10. PNAS Online. March 16.
  5. Pechenino AS, Frick KM. (2009) The effects of acute 17beta-estradiol treatment on gene expression in the young female mouse hippocampus. Neurobiology of Learning and Memory. March; 91(3):315-22.

  6. Drozdov I, Kidd M, Nadler B, Camp RL, Mane SM, Hauso O, Gustafsson BI, Modlin IM.  (2009)  Predicting neuroendocrine tumor (carcinoid) neoplasia using gene expression profiling and supervised machine learning.  Cancer.  Feb 5. [Epub ahead of print]

  7. Kaya Bilguvar, Katsuhito Yasuno, Mika Niemelä, Ynte M. Ruigrok, Mikael von und zu Fraunberg, Cornelia M van Duijn, Leonard H van den Berg, Shrikant Mane, Christopher E. Mason, Murim Choi, Emilia Gaál, Yasar Bayri,  Zulfikar Arlier, Sudhakar  Ravuri, Antti Ronkainen, Atsushi Tajima, Aki Laakso, Akira Hata, Hidetoshi Kasuya, Timo Koivisto, Jaakko Rinne, Juha Öhman,  Breteler, Cisca Wijmenga, Matthew W. State, Gabriel J.E. Rinke, Juha Hernesniemi,  Aarno Palotie, Ituro Inoue, Richard P. Lifton, Murat Günel. Genome-wide association identifies susceptibilityloci for intracranial aneurysm in European and Japanese populations (2008), Nature Genetics, In Press.

  8. Stetson DB, Ko JS, Heidmann T, Medzhitov R.  (2008) Trex1 prevents cell-intrinsic initiation of autoimmunity.  Cell. Aug 22;134(4):587-98.

  9. Marioni J, Mason C, Mane S, Stephens M, Gilad Y. (2008) RNA-Seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res, 18(9):1509-17.

  10. Yono M, Mane SM, Lin A, Weiss RM, Latifpour J. (2008) Differential effects of diabetes induced by streptozotocin and that develps spontaneously on prostate growth in Bio Breeding (BB) rats. Life Sci. 83(5-6):192-7.

  11. Beltran AS, Sun X, Lizardi PM, and Blancafort P. Reprogramming epigenetic silencing: artificial transcription factors synergize with chromatin remodeling drugs to reactivate the tumor suppressor mammary serine protease inhibitor. Molecular Cancer Therapeutics 2008,7(5):1080-90.

  12. Stone KL, Bjornson RD, Blasko GG, Bruce C, Carriero NJ, Colangelo CM, Crawford JK, Crawford JM, daSilva NC, Deluca JD, Elliott JI, Elliott MM, Flory PJ, Folta-Stogniew EJ, Gulcicek E,  Lee JY, Lin A, LoPresti MB, Mane SM, McMurray WJ, Tikhonova IR, Westman S, Williams NA, Wu T, Hongyu Z, Williams KR. Keck Foundation Biotechnolgy Resource Laboratory, Yale University, Yale J Biol Med, 2007. 80(4)195-211.

  13. Kidd M, Modlin IM, Shapiro MD, Camp RL, Mane SM, Usinger W, Murren JR. (2007) CTGF, intestinal stellate cells and carcinoid fibrogenesis. World J. Gastroenterol. Oct ;13(39):5208-16.

  14. Bayrakli F, Bilguvar K, Mason CE, Diluna ML, Bayri Y, Gungor L, Terzi M, Mane SM, Lifton RP, State MW, Gunel M.(2007) Rapid identification of disease-causing mutations using copy number analysis within linkage intervals. Hum Mutat. 2007 Aug 3; [Epub ahead of print]
  15. Carrithers MD, Carrithers LM, Czyzyk J, Henegariu O. (2007) Characterization of a severe parenchymal phenotype of experimental autoimmune encephalomyelitis in (C57BL6xB10.PL)F1 mice. J Neuroimmunol.;187(1-2):31-43.
  16. Khanna-Gupta, A., Hong Sun, Theresa Zibello, Han Myung Lee, Richard Dahl, Laurence A. Boxer, Nancy Berliner. (2007) Growth Factor Independence 1 (Gfi-1) plays a role in mediating Specific Granule Deficiency (SGD) in a patient lacking a functional abnormality in the C/EBPe gene.  Blood.;109(10):4181-90.
  17. Jiao Y, Deng XW. (2007) A genome-wide transcriptional activity survey of rice transposable element-related genes. Genome Biol. 2007;8(2):R28.

  18. Roberts SJ, Ng BY, Filler RB, Lewis J, Glusac EJ, Hayday AC, Tigelaar RE, Girardi M. (2007) Characterizing tumor-promoting T cells in chemically induced cutaneous carcinogenesis. Proc Natl Acad Sci U S A. Apr 17;104(16):6770-5.

  19. Johung, K., Goodwin, E.C., Dimaio, D. (2007) Human papillomavirus E7 repression initiates a transcriptional cascade driven by the retinoblastoma family in senescing cervical carcinoma cells. J Virol. 2007 Mar;81(5):2102-16
  20. Kidd M, Modlin IM, Pfragner R, Eick GN, Champaneria MC, Chan AK, Camp RL, Mane SM. (2007) Small bowel carcinoid (enterochromaffin cell) neoplasia exhibits transforming growth factor- beta1-mediated regulatory abnormalities including up-regulation of C-Myc and MTA1. Cancer: 2007;109(12):2420-31
  21. Kidd M, Nadler B, Mane S, Eick G, Malfertheiner M, Champaneria M, Pfragner R, Modlin I. (2007) GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR. Physiol Genomics.;30(3):363-70
  22. Kidd, M., IM Modlin, GN Eick, RL Camp, SM Mane. (2007) The role of CCN2/CTGF in the proliferation of Mastomys Enterochromaffin-like cells and gastric carcinoid development.  Am J Physiol Gastrointest Liver Physiol.;292(1):G191-200.
  23. Kidd M, Modlin IM, Shapiro MD, Camp RL, Mane SM, Usinger W, Murren JR. (2007) CTGF, intestinal stellate cells and carcinoid fibrogenesis. World J Gastroenterol.21;13(39):5208-16.
  24. Lee TS, Mane S, Eid T, Zhao H, Lin A, Guan Z, Kim JH, Schweitzer J, King-Stevens D, Weber P, Spencer SS, Spencer DD, de Lanerolle NC. (2007) Gene expression in temporal lobe epilepsy is consistent with increased release of glutamate by astrocytes. Mol Med.;13(1-2):1-13.
  25. Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. (2007) Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell.;19(3):731-49.
  26. Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Wang Deng X. (2007) Global identification and characterization of transcriptionally active regions in the rice genome. PLoS ONE.;2(3):e294.
  27. Mani A, Radhakrishnan J, Wang H, Mani A, Mani MA, Nelson-Williams C, Carew KS, Mane S, Najmabadi H, Wu D, Lifton RP. (2007) LRP6 mutation in a family with early coronary disease and metabolic risk factors. Science. 2007 Mar 2;315(5816):1278-82.
  28. Qin G, Gu H, Ma L, Peng Y, Deng XW, Chen Z, Qu LJ. (2007) Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis. Cell Res. 2007 May;17(5):471-82.
  29. Rizzolo LJ, Chen X, Weitzman M, Sun R, Zhang H. (2007) Analysis of the RPE transcriptome reveals dynamic changes during the development of the outer blood-retinal barrier.Mol Vis.;13:1259-73.
  30. Su, N., He, K., Jiao, Y., Chen, C., Zhou, J., Li, L., Bai, S., Li, X., Deng, X.W. (2007) Distinct  reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice. Plant Mol Biol. 63:337-349.
  31. Tanis KQ, Duman RS, Newton SS. (2007) CREB Binding and Activity in Brain: Regional Specificity and Induction by Electroconvulsive Seizure.Biol Psychiatry. 2007 Oct 13; [Epub ahead of print]  
  32. Wang Z, Cao G, Wang X, Miao J, Liu X, Chen Z, Qu LJ, Gu H.(2007) Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants.Plant Cell Rep. 2007 Sep 5; [Epub ahead of print]
  33. Zhou, J., Wang, X., Jiao, Y., Qin, Y., Liu, X., He, K., Chen, C., Ma, L., Wang, J., Xiong, L., Zhang, Q., Fan, L., Deng, X.W. (2007) Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol.;63(5):591-608, 2006
  34. Chimge, N., Mungunsukh, O., Ruddle, F., and Bayarsaihan, D. (2006) Gene expression analysis of TFII-I modulated genes in mouse embryonic fibroblasts. JEZ Part B,308(3):225-35
  35. Chu, W., Juan Zhang, Ke,HZ., Chalouni,C., Vignery,A. (2206)  The intracellular domain of CD44 promotes the fusion of macrophages.  Blood, 796-805. 
  36. Hager, J. (2006) Making and using spotted DNA Microarrays in an academic core laboratory In Methods in Enzymology Vol. 410: 135-68.
  37. Huang, S., F Schatz; R Masch; M Rahman; L Buchwalder; T Niven-Fairchild; C Tang; VM   Abrahams; G Krikun; CJ Lockwood (2006) Regulation of Chemokine Production in Response to Pro-inflammatory Cytokines in First Trimester Decidual Cells. J Reprod Immunol 72(1-2):60-73.
  38. Kidd M, Modlin IM, Mane SM, Camp RL, Latic I, Zikusoka MN. (2006) The Utility of Molecular Genetic Signatures in the Delineation of Gastric Neoplasia. Cancer; 106(7):1480-8.
  39. Kidd, M., IM Modlin, GN Eick, MC Champaneria. (2006) Isolation, Functional Characterization and Transcriptome of Mastomys Ileal Enterochromaffin Cells.  Am J Physiol Gastrointest Liver Physiol.;291(5):G778-91
  40. Kidd, M., Modlin, I.M., Mane, S.M., and Shapiro, M.D. (2006) Q RT-PCR Detection of Chromogranin A: A New standard in the identification of neuroendocrine tumor disease. Ann Surg., 243, 273-280.
  41. Kidd, M., Modlin, I.M., Mane, S.M., Camp, R.L., Eick, G., and Latich, I. (2006) The role of genetic markers, NAP1L1, MAGE-D2 and MTA1, in defining small intestinal carcinoid neoplasia. Annals of Surgical Oncology, 13(2), 253-262.
  42. Kidd, M., Modlin, I.M., Mane, S.M., Camp, R.L., Latich, I., and Zikusoka, M.N. (2006) The utility of molecular genetic signatures in the delineation of gastric Neoplasia. Cancer, 106(7),1480-1488.
  43. Kim, K., Page, G.P., Beasley, T.M., Barnes, S., Scheirer, K.E., and Allison, D.B. (2006) A proposed metric for assessing the measurement auality of individual microarrays. BMC Bioinformatics., 7(1), 35.
  44. Koklanaris, N.,  JC Nwachukwu; SJ Huang; S Guller; K Karpisheva; M Garabedian; M Lee (2006) First-trimester trophoblast cell model gene response to hypoxia. Am J Obstet Gynecol ;194: 687-93
  45. Lei, H., Juan, A.H., Kim, M., Ruddle, F., (2006) Identification of a Hoxc8-regulated transcriptional network in mouse embryo fibroblast cells. PNAS; 103; 10305-10309.
  46. Lockwood, C., P Matta; G Krikun; LA Koopman; R Masch; P Toti; F Arcuri; SJ Huang; EF Funai and F Schatz (2006) Regulation of chemoattractant protein-1 expression by tumor necrosis factor alpha and interleukin-1 beta in first trimester decidual cells: implications for preeclampsia. Am J Pathol ; 168 (2): 445-52
  47. Modlin, I.M., M Kidd, I Latich, MN Zikusoka, GN Eick, SM Mane, RL Camp. (2006)  Genetic differentiaion of appendiceal tumor malignancy:  a guide for the perplexed.  Ann Surg. l;244(1):52-60.
  48. Modlin, I.M., M Kidd, R Pfragner, GN Eick, MC Champaneria. (2006)  The functional characterization of normal and neoplastic human enterochromaffin cells.  J Clin Enocrinol Metab.;91(6):2340-8.
  49. Nakayama Y, Stabach P, Maher SE, Mahajan MC, Masiar P, Liao C, Zhang X, Ye ZJ, Tuck D, Bothwell AL, Newburger PE, Weissman SM.(2006) A limited number of genes are involved in the differentiation of germinal center B cells. Cell Biochem.;99(5):1308-25
  50. Patterson, T.A., Lobenhofer, E.K., Fulmer-Smentek, S.B., Collins, P., Chu, T-M., Bao, W., Fang, H., Kawasaki, E.S., Hager, J., Tikhonova, I.R., Walker, S.J., Zhang, L., Hurban, P., de Longueville, F., Fuscoe, J.C.,  Tong, W., Shi, L., and Wolfinger, R.D. (2006) Performance Comparison of One-Color and Two-Color Platforms Within the Microarray Quality Control (MAQC) Project. Nature Biotechnology. 24(9):1140-50.
  51. Ploski, J., Newton, S., and R. Duman. (2006) Electroconvulsive seizure-induced gene expression profile of the hippocampus dentate gyrus granule cell layer. J Neurochem.;99(4):1122-32
  52. Ramana, C.,Chintapalli.J.,Xu.L.,Alia.C., Zhou.J,Bruder.D., Enelow.R.. (2006) Lung Epithelial NF-kappaB and Stat1 Signaling in Response to CD8+ T Cell Antigen Recognition.  Journal of Interferon & Cytokine Research.  26:318-327.
  53. Resnick,M., Sabo,E., Meitner,P., Kim,S., Cho, Y., Kim, H., Tavares, R., Moss, S. (2006) Global analysis of the human gastric epithelial transcriptome altered by H. pylori eradication in vivo.  Gut.;55(12):1717-24
  54. Sarno, J., F Schatz; CJ Lockwood; SJ Huang; HS Taylor (2006) Thrombin and Interleukin-1 Beta regulates HOXA10 Expression in Human Term Decidual Cells: Implications for Preterm Labor. J Clin Endocrinol Metabol,;91(6):2366-74
  55. Shi, L. et al., MAQC Consortium. (2006) The MicroArray Quality Control (MAQC) project shows interplatform reproducibility of gene expression measurements. Nature Biotechnology. 24(9):1151-1161.
  56. Stetson, D.B., R Medzhitov.  (2006) Recognition of cytosolic DNA activates an IRF3-dependent innate immune response. Immunity.; 24 (1); 93-103.
  57. Wade, C., Umbarger, M. and M.A. McAlear (2006) The yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes.  Yeast 23:293-306.
  58. Zhang SS, Xu X, Liu MG, Zhao H, Soares MB, Barnstable CJ, Fu XY.(2006) A biphasic pattern of gene expression during mouse retina development. BMC Dev Biol.6(48) 2005
  59. Amin, D.N., Tuck, D., and Stern, D.F. (2005) Neuregulin-regulated gene expression in mammary carcinoma cells. Exp Cell Res., 10, 309(1), 12-23.
  60. Cakmak, H., F Schatz; SJ Huang; L Buchwalder; M Rahman; A Arici; CJ Lockwood (2005) Progestin suppresses thrombin and interleukin-1b induced interleukin-11 production in term decidual cells: Implication for preterm delivery.  J Clin Endocrinol Metab 2005; 90: 5279-5286
  61. Cook, H.L., Lytle, J.R., Mischo, H.E., Li, M.J., Rossi, J.J., Silva, D.P., Desrosiers, R.C., and
    Steitz, J.A. (2005) Small nuclear RNAs encoded by Herpesvirus saimiri upregulate the expression of genes linked to T cell activation in virally transformed T cells. Curr Biol., 15(10), 974-9.
  62. Drazinic, C.M., Adife G Ercan-sencicek, Laura Gault, Faki Hisama, Martin Qumsiyeh, Nowak, Joseph Cubells and Matthew State. (2005) Rapid array based genomic characterization of a subtle structural abnormality: A patient with Psychosis and der (18) t (p14.1;p11.23). American Journal of Medical Genetics, 1-8.
  63. Eick G, Kidd M, Shapiro MD, Camp RL, Mane SM, Modlin IM. (2005) Microsatellite instability andgene mutations in TGFβRII are absent in small bowel carcinolids. Cancer ;103(2):229-36
  64. Feng, J.X., Liu, D., Pan, Y., Gong, W., Ma, L.G., Luo, J.C., Deng, X.W., and Zhu, Y.X. (2005) An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol., 59(6), 853-868.
  65. Grau, M., Sole, X., Obrador, A., Tarafa, G., Vandrell, E., Valls, J., Moreno, V., Peinado, M.A., and Capella G. (2005) Validation of RNA arbrirarily primed PCR probes hybridized to hlass cDNA microarrays: Application to the analysis of limited samples. Clin Chem., 51(1), 93-101.
  66. Hunsberger, J.G., Bennett, A.H., Selvanayagam, E., Duman, R.S., and Newton, S.S. (2005) Gene profiling the response to kainic acid induced seizures. Brain Res Mol Brain Res.141:95-112.
  67. Jiao, Y., Ma, L., Strickland, E., and Deng, X.W. (2005) Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell, 17(12), 3239-3256.
  68. Kidd, M., Eick, G., Shapiro, M.D., Camp, R.L., Mane, S.M., and Modlin, I.M. (2005) Microsatellite instability and gene mutations in TGFβRII are absent in small bowel carcinolids. Cancer, 103, 229-236.
  69. Klein, R., Carolyn Zeiss, Emily Chew, Jen-Yue Tsai, Richard Sackler, Haynes Chad, Alice Henning, John SanGiovanni, Shrikant mane, Susan Mayne, Michael Bracken, Frederick Ferris, Jurg Ott, Colin Barnstable, Josephine Hoh. (2005) Complement factor H polymorphism in age-related macular degeneration. Science, 308:309-452.
  70. Kluger, H.M., Lev, D.C., Kluger, Y., McCarthy, M.M., Kiriakova, G., Camp, R.L., Rimm, D.L., and Price, J.E. (2005) Using a Xenograft Model of Human Breast Cancer Metastasis to Find Genes Associated with Clinically Aggressive Disease. Cancer Res., 65(13), 5578-5587.
  71. Krikun G; Mor G; Huang J; Schatz F; Lockwood CJ Metalloproteinase expression by control and telomerase immortalized human endometrial endothelial cells. Histol Histopathol 2005; 20: 719-724 Histol Histopathol. 2005 Jul;20(3):719-24.
  72. Krikun G; Schatz F; Taylor R; Critchley HO; Rogers PA; Huang J; Lockwood CJ The immune environ Endometrial endothelial cell steroid receptor expression and steroid effects on gene expression. J Clin Endocrinol Metab. 2005 Mar; 90(3):1812-8.
  73. Lei, H., Wang, H., Juan, A.H., and Ruddle, F.H. (2005) The identification of Hoxc8 target genes. Proc Natl Acad Sci U S A., 102(7), 2420-4.
  74. Ma, L., Chen, C., Liu, X., Jiao, Y., Su, N., Li, L., Wang, X., Cao, M., Sun, N., Zhang, X., Bao, J., Li, J., Pedersen, S., Bolund, L., Zhao, H., Yuan, L., Wong, G.K., Wang, J., Deng, X.W., and Wang, J. (2005)  A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res. 15(9), 1274-1283.
  75. Ma, L., Sun, N., Liu, X., Jiao, Y., Zhao, H., and Deng, X.W. (2005) Organ-specific expression of Arabidopsis genome during development. Plant Physiol., 138(1), 80-91.
  76. Meng, H.,  Smith.S., Hager. K., Matthew Held.M,  Liu.J., Olson.R., Pennington.B., DeFries.J., Gelernter.J., O'Reilly-Pol.T., Somlo.S., Skudlarski.P., Shaywitz.S., Shaywitz.B., Marchione.K., Wang.Y., Paramasivam.M., LoTurco.J., Page.G., Gruen.J  (2005) DCDC2 is associated with reading disability and modulates neuronal development in the brain .PNAS | | vol. 102(47), 17053-17058
  77. Nahed BV, Seker A, Guclu B, Ozturk AK, Finberg K, Hawkins AA, DiLuna ML, State M, Lifton RP, Gunel M. (2005) Mapping a Mendelian form of intracranial aneurysm to 1p34.3-p36.13. Am J Hum Genet.;76(1):172-9.
  78. Chen Jie G, Rasin MR, Kwan K and Sestan N. (2005) Xfp 312 is required for subcortical axonal projections and dentritic morphology of deeo-layer pyramidal neurons of the cerebral cortex. PNAS: 102(49): 17793-99.
  79. Newton, S.S., Bennett, A., and Duman, R.S. (2005) Production of custom microarrays for neuroscience research. Methods 37(3), 238-246.
  80. Pedra, J.H., Sukumaran, B., Carlyon, J.A., Berliner, N., and Fikrig, E. (2005) Modulation of NB4 promyelocytic leukemic cell machinery by Anaplasma phagocytophilum. Genomics, 86, 365-77.
  81. Rinn, J., and M Snyder.  Sexual dimorphism in mammalian gene expression (2005).  Trends Genet.; 21(5):298-305.
  82. Song, X., Ying Sun, and Alan Garen  Roles of PSF protein and VL30 RNA in reversible gene regulation. (2005) PNAS, 102: 12189-12193.
  83. Sukumaran B, Carlyon JA, Cai JL, Berliner N, Fikrig E.  (2005) Early transcriptional response of human neutrophils to Anaplasma phagocytophilum infection.  Infect Immun. 2005 Dec; 73 (12):8089-99.  PMID:  16299303. Infect Immun.;73(12):8089-99.
  84. Yatsula, B., Lin, S., Read, A., Poholek, A.., Yates, K., Yue, D., Hui, P., and Perkins, A. (2005) Identification of binding sites of EVI1 in mammalian cells. J. Biol Chem.  280(35), 30712-30722.
  85. Yono, M., HE Foster Jr., D Shin, S Mane, J Latifpour. (2005) Molecular classification of doxazosin-induced alterations in the rat prostate using gene expression profiling.  Life Sciences, vol. 77(4), 470-479.
  86. Zhang, S.S., Xu, X., Li, J., Liu, M.G., Zhao, H., Soares, M.B., Barnstable, C.J., and Fu, X.Y. (2005) Comprehensive in silico functional specification of mouse retina transcripts. BMC Genomics, 6(1), 40.
  87. Zhang, W.K., Shen, Y.G., He, X.J., Du, B.X., Xie, Z.M., Luo, G.Z., Zhang, J.S., and Chen, S.Y. (2005) Characterization of a novel cell cycle-related gene from Arabidopsis. J Exp Bot., 56(413), 807-816.
  88. Amin, D.N., Perkins, A.S., and Stern, D.F. (2004) Gene expression profiling of ErbB receptor and ligand-dependent transcription. Oncogene 23(7), 1428-38.
  89. Balachandran, S., Emmanuel Thomas, and Glen N. Barber. A (2004) FADD-dependent innate immune mechanism in mammalian cells. Nature,432:401-405.
  90. Chalasani, G., Li, Q., Konieczny, B.T., Smith-Diggs, L., Wrobel, B., Zhenhua, D., Perkins, D.L., Baddoura, F.K.,  and Lakkis, F.G. (2004) The allograft defines the type of rejection (Acute versus Chronic) in the face of an established effector immune response 1. The Journal of Immunology, 172, 7813–7820.
  91. Chalasani, G., Qi Li, Bogumila T. Konieczny, Lonnette Smith-Diggs, Barbara Wrobel, Zhenhua Dai, David L. Perkins, Fady K. Baddoura, and Fadi G. Lakkis. (2004) The allograft defines the type of rejection (Acute versus Chronic) in the face of an established effector immune response 1. The Journal of Immunology, 172: 7813–7820
  92. Chen, J., Newton, S.S., Zeng, L., Adams, D.H., Dow, A.L., Madsen, M., Nestler, E.J., and Duman, R.S. (2004) Downregulation of the CCAAT-enhancer binding protein beta in deltaFosB transgenic mice and by electroconvulsive seizures. Neuropsychopharmacology, 29(1), 23-31.
  93. Cheung, K.H., de Knikker, R., Guo, Y., Zhong G., Hager, J., Yip, K.Y., Kwan, A.K.H., Li, P., and Cheung, D.W. (2004) Biosphere: the interoperation of web services in microarray cluster analysis. Applied Bioinformatics, 3(4), 253-256.
  94. Cheung, K.H., Hager, J., Pan, D., Srivastava, R., Mane, S., Li, Y., Miller, P., and Williams, K. (2004) KARMA: A web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Research 32 (Web Server issue):W441-W444.
  95. Cook, H.L, Mischo, H.E., and Steitz, J.A. (2004) The Herpesvirus saimiri small nuclear RNAs recruit AU-rich element-binding proteins but do not alter host AU-rich element-containing mRNA levels in virally transformed T cells. Mol Cell Biol., 24(10), 4522-33.
  96. Hoek, K., Rimm, D. L., Williams, K. R., Zhao, H., Ariyan, S., Lin, A., Kluger, H.M., Berger, A. J., Cheng, E., E. Trombetta, S., Wu, T., Niinobe, M., Yoshikawa, K., Hannigan, G. E., and Halaban, R. (2004) Expression profiling reveals novel pathways in the transformation of melanocytes to melanomas. Cancer Res., 1, 64(15), 5270-5282.
  97. Khil, P.P., Smirnova, N.A., Romanienko, P.J., and Camerini-Otero, R.D. (2004) The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat Genet. 36(6), 642-646.
  98. Kidd M, Hinoue T, Eick G, Lye KD, Wei Y, Mane SM, Modlin IM. (2004) Global Gene Expression Analysis of ECL Cells in the Mastomys Gastric Mucosa Identifies Alteration in the Activator Protein-1 Pathway. Physiol Genomics; 20(1):131-142.
  99. Kidd, M., Hinoue, T., Eick, G., Lye, K.D., Wei, Y., Mane, S.M., and Modlin, I.M. (2004) Global gene expression analysis of ECL cells in the mastomys gastric mucosa identifies alteration in the activator Protein-1 pathway. Physiol Genomics 20(1), 131-142.
  100. Kluger, H.M., Kluger, Y., Gilmore-Hebert, M., Chang, J., Rodov, S., Mironenko, O., Kacinski, B., Perkins, A., and Sapi, E. (2004) cDNA Microarray Analysis of Invasive and Tumorigenic Phenotypes in a Breast Cancer Model. Lab Invest., 84(3), 320-331.
  101. Kozal M, Chiarella J. (2004) Development of a DNA Microarray to Detect HCV and HIV Drug Resistance. XIII International HIV Drug Resistance Workshop, Tenerife Sur, Canary Islands, Spain June 8-10, 2004 Abstract # 122.
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