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Keck Home Page > Protein Chemistry > Mass Spectrometry: MALDI

Mass Spectrometry:
Matrix Assisted Laser Desorption Ionization

MALDI (Matrix Assisted Laser Desorption Ionization) MS in positive ionization mode is used to obtain intact protein masses, for comparative tryptic peptide mapping, screening of RP-HPLC isolated tryptic peptides prior to Edman sequencing, peptide biomarker discovery, and Q/C of peptides made in the Keck Peptide Synthesis Resources. Masses can be obtained on 1-500 fmol of 750-2,500 Da peptides with an average mass accuracy (external calibration) of <150 ppm (parts per million) in linear and 70 ppm in reflectron mode – which provides monoisotopic peptide masses. A variety of biomolecules can be analyzed including oligosaccharides, gangliosides, and proteins that are up to ~250,000 Da. Because of matrix interference, the lower mass limit is about 750 Da. Protein solutions in 10 μM volatile buffers can be analyzed directly while samples with higher salt concentrations require prior C4 ZipTip desalting.

 

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Last modified: 23-Oct-2006 (GB)